The overall architecture of PathText 2 is illustrated in Figure 1.
In Figure 3, we see an example of PathText manual annotation.
The implementation of PathText relies on the software being developed by the consortium members.
Availability: An online demonstration of PathText 2 and the annotated corpus are available for research purposes at http://www.nactem.ac.uk/pathtext2/.ac.uk/pathtext2/
The central component of PathText is the Integrator, which coordinates interaction between (i) Payao pathway visualizations, (ii) TM systems, (iii) manual annotations and (iv) the PathText results GUI (see Fig. 1).
Such support could further allow integration of PathText 2 with numerous domain tools such as Cytoscape (Smoot et al., 2011).
Internal informal evaluation by our collaborating biology teams has demonstrated the usefulness of PathText for their work.
Table 6 gives the results of manual evaluation of PathText 2 with three settings contrasted with PubMed search, showing the top 10 precision and nDCG of the manual evaluations on five reactions.
Her poems were rhythmic mappings of survival.
The apps provide more mappings of the music and science.
