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The "fishClones" table provided mappings for an additional 6% of the BACs.
Our comparative performance evaluations presented in this section are with regards to those achieved in SubMAP (Ay et al., 2011), as the used problem definitions are the same; the goal being one-to-many mappings for an input pair of pathways.
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We set up a new variant of cyclic generalized contractive mappings for a map in a metric space and present existence and uniqueness results of fixed points for such mappings.
We say that an algorithm accurately predicts the atom mappings for a reaction if each atom mapping for that reaction matches that obtained by manual curation.
Entering into the filtering section of the pipeline, we have a set of possible mappings for a given fragment where each mapping is marked with an origin flag.
Since the surface forms are keyterms, we build a mapping dictionary for keyterms, which materializes the possible mappings for a keyterm kt.
Furthermore, some methods, e.g. mr- and mrsFAST, do not report any mapping quality scores, they rather report all possible mappings for a read.
The --very-sensitive-local incostses sensitivity at the coft of computational resources, while -a returns all possible mappings for a single read, rather than just the top mapping.
It is fortunate that many atom mapping algorithms have been developed, but which is most suited to predict atom mappings for a genome-scale metabolic network reconstruction?
A compact representation of all chemically equivalent atom mappings for a single reaction can be achieved by assigning the same atom mapping number to chemically equivalent atoms (Fig. 7).
We also compared these predictions with manually curated atom mappings for a set of 512 human metabolic reactions.
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CEO of Professional Science Editing for Scientists @ prosciediting.com