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SAM files obtained from mapping were converted and visualized using SAMtools [41] and BamView [42].
bChIP-regions identified from Affymetrix_NCBIv34 probe mapping were converted into NCBIv35 version using LiftOver program.
Scores of all markers used for mapping were converted into genotype codes using the A/H/B system for co-dominant and A/C, B/D system for dominant markers segregating in F2 population.
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In essence, the sequences of a set of orthologous genes are aligned, the positions of introns are mapped, and the mapping is converted into a 0 1 matrix.
Finally, the FC maps were converted to z-score maps by Fisher Z-transformation.
All the thematic maps were converted into grid (raster format) and analyzed by weighted overlay method (rank and weightage wise thematic maps).
All the maps were converted into raster format and georeferenced to common reference point in the Universal Transverse Mercator plane coordinate system.
Time structure maps of these reservoirs were later generated, and using the available checkshot data and suitable logs, the time maps were converted to top structure maps which were used to calculate the GRV and hydrocarbon volume.
Since the variograms are sensitive to the spatial resolution of the dataset [28], the maps were converted to raster format at 1 Km resolution before the analysis and the Gibbs & Brown map was excluded because of its lower native resolution.
For geo-referencing, the latitudes and longitudes of a reference map were converted into X, Y coordinates, and the corresponding X, Y coordinates were put on the scanned map.
Finally, the correlation coefficient maps were converted into z maps by Fisher's r-to-z transform to improve the normality [44].
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