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Altogether 16 full consensus genomes (8 clinical samples and 8 cultured samples) generated by reference based mapping were aligned against a collection of 23 C. trachomatis genomes retrieved from GenBank.
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Each restriction map produced by optical mapping was aligned with the restriction map predicted from the X. nematophila genome sequence.
Maps were aligned to the human reference by OPTIMA, a new glocal alignment method.
The ICX neurons responded much more strongly to the light than they had when the maps were aligned.
The DH and the RI maps were aligned based on a common set of 135 SSR markers (Supplemental Fig. 1).
The individual filament maps were aligned in real space, normalized, and averaged [42], [43].
Then, all the other FA maps were aligned to the first FA map using rigid-body registration with six degrees of freedom.
Optical maps were generated by digestion with NcoI of DNA arrayed linearly on glass slides and the resulting maps were aligned and compared with the MapSolver software package (OpGen, Inc., Gaithersburg MD).
Linkage maps were aligned using homologous unigenes as anchor points.
Consensus genome maps were aligned to an in silico Nt.BspQI sequence motif map of hg19.
Female, male and consensus maps were aligned using the software MapChart [ 83].
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