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For tags mapping to unique locations in the genome, it is obvious that the mapped locus was cloned and sequenced as many times as the number of reads of the given tag.
f Reads mapping to unique locations in the grapevine genome, and the corresponding percentage of mapped reads.
Tags mapping to unique locus were used to analyze the distribution of transcripts.
Reads mapping to unique genomic positions were sorted based on overlap with repetitive element genomic instances.
They comprised 142,825 reads mapping to unique loci and 176,135 reads mapping to multiple loci.
Following quality control, mapping to unique positions in the human genome, and deduplication, 37-59% reads were retained (Additional file 2: Table S1).
Similar(39)
Those uniquely aligned reads (reads mapped to unique locations in the reference genome) were retained.
On average, 58.3% of sequenced reads could be mapped to unique locations in the A. queenslandica genome (19 45 million mapped reads).
Only 17 topics in the Bio-LDA model can mapped to unique topics in the LDA model.
Less tags mapped ambiguously (28 31% of the tags mapped to unique P. fastigiatum ESTs while only 4 14% tags mapped to unique A. thaliana ESTs).
Reads mapped to unique positions in the reference sequence were counted according to their mapping location.
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