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Exact(6)
The remaining 84.9% of the tags uniquely mapped to the human genome with 9.6% of these tags mapping to unannotated regions.
Total RNA and rRNA-depleted RNA have significantly more reads mapping to unannotated regions of the genome than does polyA RNA, suggesting they should be used as the source of RNA in transcriptome profiling if a comprehensive survey is desired.
This allows Grape to recover the reads mapping to unannotated 'bona fide' splice sites.
Potentially novel genes were first identified by CuffLinks as significant reads mapping to unannotated regions of the dm3 genome that fit our expression criteria.
We next assessed the sequence characteristics of these novel clones to determine if there were differences between those mapping to unannotated regions of the genome relative to those clones mapping to known transcripts.
Mapping the unigenes matching the grape genome in regions not annotated as coding sequences to the VvGI identified a further 2,663 transcripts that, together with the remaining 3,709 unigenes mapping to unannotated regions of the genome and that we considered putative novel genes, raised the grape genes represented to 21,846.
Similar(54)
As expected, 86.5 % of these 21-nt phasiRNAs mapped to unannotated regions of the O. sativa genome.
Most of the reads mapped to unannotated regions 40-700%) probably due the scarcity of annotated elements for Anopheles gambiae.
Even in mammals, a large part of regulatory RNAs is still unidentified [ 68], so that ~40% of reads map to unannotated regions [ 16].
These 135 tag types represented 114 candidate genes with 7 tag types that did not map to the genome, 5 tag types that mapped to unannotated genomic locations, and 9 genes that were associated with more than one tag type.
Transcripts that mapped to unannotated regions of the T. hominis genome were screened for potential ORFs by using BLASTx to search against the nr database with an E-value threshold of 0.01.
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