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Other reads mapping to divergent regions may not have a continuous stretch of 14 conserved nucleotides.
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Thirty-eight percent of core ORC1/CDC6 binding sites (136 in total, mapped at FDR ≤0.2) mapped to divergent SSRs, of which 62 (70%) out of the predicted 88 such loci showed evidence of at least 1 ORC1/CDC6 binding site.
For example, on chromosome 7 two large groups of linked loci on the BovGen RH map locate to divergent positions in both the Btau_2.0 and MARC 2004 map, however, these latter two maps agree.
This may be partly due to the fact that the default settings of Bowtie2 and Stampy are more sensitive, and so reads may be successfully mapped to more divergent regions.
RepeatScout was used to construct consensus sequences representing fragments of ancestral elements from all shotgun reads masked by each family; multiple divergent consensus sequences mapping to the same TE region represent different subfamilies (Macas et al. 2007).
These sequences were divergent from the class I sequences mapping to chromosome 13 and were named SppuUCA, UCB, and UCC.
Additionally, after generating the consensus sequence, there will be reads that will not map to this sequence because they are too divergent from the consensus "master" sequence despite previously mapping to some of the individual genomes in the database.
Insurgent is the sequel to Divergent and the second book in the Divergent trilogy.
The divergent investment styles have led to divergent fortunes of late for the firms.
I recommend this to Divergent fans or Maze Runner fans.
"Families got separated due to divergent opinions on this matter".
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com