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Model outputs enable quantifying and mapping the respective effects of processes at different scales.
Mapping the respective genes found by each approach onto the canonical Wnt pathway was performed (KEGG [13] and Biocarta databases (BioCarta Pathways; http://www.biocarta.com/genes/index.asp)).asp
To do this, our detailed proteome (8510 proteins) and transcriptome (mRNA from 9667 genes) data sets from the asynchronous NB4 cell cultures were merged by mapping the respective protein and gene identifiers to Ensembl Gene IDs.
This was done by comparing the network generated based on our data from mapping the respective peaks along genomic location with those derived from the TargetScan prediction.
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After mapping the reads to the respective genomes, we only used those sequences that mapped uniquely (1 locus) and perfectly (without any error) for further processing analysis.
To obtain binocular fusion, the optical axes of the two eyes were first determined by mapping the borders of the respective receptive fields and then aligned on the computer screen with adjustable prisms placed in front of one eye.
Screening of a new set of SNP markers (KASPar assays) on a set of 24 diverse pigeonpea genotypes representing the parents of 14 mapping populations segregating for various economically important traits provides readily available polymorphic markers for developing genetic maps and undertaking trait mapping in the respective mapping populations.
Furthermore, mapping the misconfigured domains to their respective web hosting provider shows that only 5 providers are responsible for 60.6 % of the found misconfigurations.
To identify genomic locations of transcripts in mammals, cDNAs were mapped onto the respective genome using GMAP software [33] with match criteria of ≥99% sequence identity and ≥99% sequence coverage.
The poly(A) trimmed reads are mapped to the respective genome using Novoalign (http://novocraft.com).
Paired-end reads in FASTQ format were mapped against the respective annotated Genbank template file.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com