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Another method to study networks with PH consists of mapping the nodes of the network to points of a finite metric space.
Given a list of nodes (proteins, genes or transcripts), the MCN joining them can easily be derived by mapping the nodes onto the scaffold interactome and finding the shortest paths among all the connected nodes.
By mapping the nodes from the reference network to the genes from the canonical pathways listed in the Molecular Signature Database v3.1 (Subramanian et al., 2005), we observe a diverse representation of cellular processes.
Losses play a fundamental role in the ability to distinguish between duplications and transfers, and in mapping the nodes of the gene tree to the nodes of the species tree, and thus should be explicitly considered during reconciliation (Stolzer et al., 2012).
Indeed, losses play a fundamental role in the ability to distinguish between duplications and transfers as well as in mapping the nodes of the gene tree into the nodes of the species tree, and thus should be explicitly considered during reconciliation.
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Subsequently, we map the nodes on the forward mesh to the structural image volume, and assign a compositional vector, {C f(r),C a(r)} for each forward node.
Based on the nodes of origin of human domains, we have mapped the node-wise distribution of corresponding Pfam families.
To estimate the minimum number of origins of ECM symbioses in Agaricomycetes, we mapped the node heights of the rosids and Pinaceae onto the phylogeny of the Agaricomycetes [ 4, 10, 26].
The location constraints must be satisfied while mapping the virtual nodes.
Mapping the network nodes with additional data, such as kinetic characterization data, was done within the Cytoscape program.
We mapped the leaf nodes of the GO annotations to DrugBank targets.
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