Sentence examples for mapping success and from inspiring English sources

Besides read quality, the choice of a suitable reference genome is influencing mapping success and quality.

We aligned sequence tags using bowtie2 [ 30] and recorded the number of aligned and uniquely aligned tags to assess mapping success and specificity, respectively.

As a balance between maximizing mapping success and minimizing multiple spurious mappings, 10 kb was chosen as the flanking region size (see supplementary materials, Supplementary Material online).

While this number represents less than 30% of the genes in our dataset associating with a GO term, it should be noted that small contigs, like those generated in 454 sequencing, can be difficult to successfully map to GO terms and that mapping success increases successively with read size.

It may, however, also reflect the conservative, rather highly expressed gene set that was selected by mapping success of crow contigs and 1 1 orthology between chicken and zebra finch.

To estimate mapping success, we quantified the total number of reads mapped and further distinguished between uniquely mapped reads and repetitively mapped reads.

Previous statistical models of BSA-seq focused on the effect of segregating sites on the mean phenotype (Magwene et al. 2011; Edwards and Gifford 2012), but their effects on the standard deviation and relative fitness can also impact mapping success when using pooled segregant approaches in S. cerevisiae (Wilkening et al. 2013).

All but two of these genes were mapped, indicating a high probability of mapping success using markers developed from the joint assembly of A. mexicanum and A. t. tigrinum contigs.

These results indicate a high probability of mapping success using EST markers developed from the joint assembly of A. mexicanum and A. t. tigrinum contigs.

It is possible that this rate of mapping success may reflect problems with this assembly, but a recent study mapping short sequence tags to the Ae. aegypti genome reported a comparable rate of mapping success [44] indicating that this rate is not likely to be an artifact of the de novo assembly process.

Alternatively, adjusting BWA mapping parameters alone could improve read mapping success rates in some cases.