Sentence examples for mapping quality zero from inspiring English sources

Reads with mapping quality zero were discarded.

0 ∗ DP ) ) > 0. 05 ) | | SB ≥ − 1. 0 | | QUAL < 10 Where MQ0 = Number of reads with mapping quality zero, DP = depth of coverage, QUAL = Phred scaled quality score, HRun = Largest contiguous homopolymer run of variant allele in either direction, QD = Variant Confidence/Quality by Depth, and SB = Strand Bias.

And in this specific example, BWA-SW properly gives a mapping quality zero, although it may overlook alternative matches in other examples.

Entire reads were excluded based on: 1) non-unique mapping (mapping quality zero), 2) nucleotide(s) inserted or deleted relative to the reference, 3) mapping quality <30.

The mapping produced a SAM formatted file containing mapping coordinates, mapping quality, and information on split reads.

MAQ and BWA generate mapping qualities.

Using mapping quality.

Average mapping quality was 30.

b HQ mapped number of high quality reads of which mapping quality score ≥ 30.

However, the average mapping quality of discordantly mapping reads was similar to the mapping quality of concordantly mapping read pairs (Table 3).

We suspect many criticisms pointing to the map quality are misguided, as we have found TomTom to provide quality maps and guidance across multiple platforms.