Sentence examples for mapping quality implemented from inspiring English sources

This leads to a relative higher false positive rate in heterozygous variants compared to the other Bayesian based approaches, the BWA+SAMtools and SMALT+SAMtools pipelines, with mapping quality implemented.

Reads with mapping quality zero were discarded.

MAQ and BWA generate mapping qualities.

A simple implementation of a mapping quality filter is implemented when possible to remove low quality mappings that could artificially inflate sensitivity (see Supplemental Materials S1).

Better accuracy of SNP detection was achieved with little loss of sensitivity when algorithms that implemented mapping quality were used.

NQS, Neighbourhood Quality Standard; * pipelines that were implemented with mapping quality.

A second approach is implemented in a program MApping short reads and calling variants using mapping Quality score MAQ (Li et al. 2008a) uses the notion of "mappability".

The algorithm implemented in MOSAIK calculates a mapping quality for each sequence and measures the probability that a sequence belongs to a specific target.

The algorithm implemented in MAQ calculates a mapping quality for each sequence that measures the probability that a sequence belongs to a specific target [ 16].

Note that we based this comparison on Bismark, as the realignment and recalibration steps implemented in Bis-SNP require the read mapping quality, which is currently not available in NGSmethPipe.

The SNP detection algorithms implemented in the Mosaik+GigaBayes and CLC Genomics Workbench pipelines are Bayesian and Neighbourhood Quality Standard respectively, but neither of them includes alignment mapping quality in the model.