Sentence examples for mapping quality for from inspiring English sources

These observations call for more accurate assessment of mapping quality for the mappings provided by these tools.

A few minor comments: Some comparison of mapping quality for the pooled sequences (as compared to the individual isofemale strains) would have been useful.

To understand whether SA006 and SA035 had high duplicate rates due to low human DNA input or whether there were other issues with read data, we examined the distribution of mapping quality for all uniquely mapped reads for each sample.

The SNV annotation takes into account the accumulated sequence quality for every allele as well as the mapping quality for each read.

The algorithm implemented in MOSAIK calculates a mapping quality for each sequence and measures the probability that a sequence belongs to a specific target.

The SNV annotation took into account the accumulated sequence quality for every allele as well as the mapping quality for each read.

Parameters for the identification of indels included that they be mapped to both strands, had a minimum indel mapping quality of 50 and minimum mapping quality of 20 for the non-indel (anchor) tags, at least an average of 10 bp from the end read position, and a minimum coverage of 8X.

Mapping of the raw reads onto the final assembly using BWA resulted in 300- and 171-fold coverage of mate-pair reads (mapping quality of at least 37) and 586- and 645-fold coverage of pair-end reads (mapping quality of 60) for S. chrysopicola and S. syrphidicola, respectively.

To ensure the quality of variant calling, the conditions for every site in a genome were set at >20 for mapping quality, >50 for variant quality and >2 for the number of supporting reads for every base.

Reads that map equally well at multiple locations or fail to map at all are given mapping qualities of 0. For many experiments, alignments below a certain mapping quality, usually values of 20, 30 or 40, are filtered out.

To help find appropriate filter settings, Trackster has dynamic filters that can be used to interactively show and hide data based on feature attribute values scores for genomic features, feature attribute values (in GFF/GTF datasets), and mapping quality scores for mapped reads.