Sentence examples for mapping qualities and from inspiring English sources

Data filtering based on mapping qualities and coverage can assist with minimizing over-inflated MOI estimates.

However, Artemis can be used to visualize and confirm this error by inspecting the read and mapping qualities and BAM flags of the alignments.

VQSR integrates multiple attributes/annotations of the variants, all of which are based on features of sequencing, including the depth of coverage, strand bias, mapping qualities and variant position bias toward the end of the reads.

Again, Figure 6 shows precision versus recall for Novoalign's mapping qualities and LoQ uM's output.

We also show how to explicitly model base and mapping qualities, and explore how quality thresholds can be used in combination with probabilistic weighting.

Figure 4 shows precision versus recall for the BWA alignment tool, with Figure 4a showing the raw mapping qualities and Figure 4b showing the output of LoQ uM.

The mapping produced a SAM formatted file containing mapping coordinates, mapping quality, and information on split reads.

Alignments are filtered based on sequencing quality, mapping quality and mismatch rates.

Stampy uses a Bayesian probabilistic model to represent mapping quality, and reports the single best alignment location.

The location was then assessed at both variants for mapping quality and the variant with the greatest support via mapping was chosen.

It performs gapped alignment for single-end reads, supports paired-end mapping, generates mapping quality and gives multiple hits if required.