We then repeated the mapping procedure, using these random sets of positions instead of the SDRs, and reproduced figure 1 for each random set of residues (Figure S1).
The mapping procedure, using CLC-BIO and the same 4x Illumina sequence read set as above, was adopted for determining the relative redundancy of LTR and inter-LTR regions of a sample of sunflower retrotransposons.
The method for the estimation of this parameter at the station locations is presented, followed by the geostatistical mapping procedure used to estimate this parameter for the whole territory of Croatia.
Figure 2 gives an explanation of the return mapping procedure used to update the frictional force.
The lichen mapping procedure used in 1970 differed from the later ones as follows: half the circumference of free-standing deciduous trees that was most covered with lichens had been examined on their lichen growth from 50 to 200 cm from the ground[2, 3].
To accommodate the global mapping procedure used in BWA and reduce the number of reads not mapped because of sequencing errors in the terminal end of the read, positions 76 87 of all remaining reads in the two lanes of 87 bp paired-end reads were trimmed using the FastX toolkit [http://hannonlab.cshl.edu/fastx_toolkit/], leaving 75 bp reads for mapping.
Due to the mapping procedure used, we did not identify any SNPs in intron-exon junctions.
Finally, since the Blast mapping procedure used in the study was found, in preliminary work, to fail on deletions or insertion longer than 10 bp, we devised a separate Blast procedure to analyze GS-FLX reads for these variants.
Our mapping procedure uses a probability-based alignment score that typically allows up to five mismatches (option -t150 in novoalign), and reads with more than five mismatches were discarded at later stages (see Materials and Methods).
Following identifying the cranial vertex on the scalp [25], the brain sites evoking the largest pharyngeal responses in each hemisphere were identified with mapping procedures using single TMS pulses over MI.
The maximum likelihood algorithm (MLA) mapping procedure was used to create four maps using the PALSAR gamma-naught image from 2010, three AFCS maps to which the Lee, Frost, and median filters had been applied, respectively, with a 3 × 3 window, and an AFCS map without any filters for comparison.
