Sentence examples for mapping position was from inspiring English sources

In summary, using a distant reference transcriptome resulted in a) fewer tags mapping, b) some genes not being surveyed for differential expression and c) lower than expected levels of expression for genes whose most abundant mapping position was not conserved.

A piRNA was considered overlapping with an ME if its mapping position is entirely within an ME.

The mapping results were processed with SAMtools [ 40] to extract for each transcript the number of mapped reads and determine, whether their mapping position is unique.

Moreover, an aligned read is deemed to be correctly aligned only if the mapping position is identical to the true position of the read.

Based on SAM files all samples were anonymized before downstream analysis so only information about reads mapping positions was used.

Using a sliding window of 500 nt, we looked for regions where at least 3 mapped positions for sRNA reads were found and where each mapped position was 24 nt (±2 nt) apart from each other.

Map position was categorized as follows: 3′/5′ UTR, CDS, intergenic, intron, non-mapped, or multi-mapped.

A bin was defined where a unique map position was assigned.

A bin continued until a new map position was ≥1 cM distance from the first map position of the bin.

A contig annotation browser supplemented with query search by unique sequence or genetic map position was developed.

Evidence for a QTL at a given map position was expressed as the log10 of the corresponding likelihood ratio (LR).