Sentence examples for mapping position for from inspiring English sources

In combination, the two consensus sequences provide consistent mapping position for piRNAs for each group.

To ensure reliable short read alignments base quality scores were taken into account to conduct an interative alignment approach aiming to identify the best mapping position for each read.

The leading short read mapping algorithms, including BWA (Li and Durbin, 2009), Bowtie (Langmead et al., 2009), and SOAP (Li et al., 2009b), all try to identify the best mapping position for each read that minimizes the number of differences between the read and the genome, i.e. the edit distance of the nucleotide strings, possibly weighted by base quality value.

Although the leading short read mapping algorithms all try to identify the best mapping position for each read, a read may still map equally well or nearly equally well to multiple positions because of paralogous sequences in the reference genome [ 11].

This database contains the genemap table providing mapping positions for genes probed in microarrays.

Indeed, when one read of a read pair maps to a unique location and the other read maps to a repetitive sequence, it is a mistake to consider that all copies of the repetition are equiprobable mapping positions for the second read.

Regarding the second model: the multiplicity of equally valid mapping positions for sequences repeated in a genome obfuscates their correct assignment to a genomic region, making reads from such regions less "mappable," both intrinsically and due to the processes by which software searches for significant alignments.

Where the cDNA shows up, as determined by a test that makes millions of copies of the representative material, suggests the proper map position for the cDNA and hence the probable location of that gene.

Marker selection and map position for loci on chromosomes 1 and X are provided in Table 1 >.

Similarly, out of 438 NB-LRR genes, physical map position for 370 (84%) genes was predicted on potato chromosomes.

No framework mapping adjustment was carried out in this study as the main objective was to provide the most likely map position for all microsatellite markers reported.