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This clearly suggests that even with preliminary mapping populations like F2, it is possible to identify the major QTLs with an appropriate population size.
QTL analysis in forest tree species is challenging by its long generation times which hinder the development of classical mapping populations like backcross, F2 or recombinant inbred lines.
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Of these, 880 SNP markers generated 1 2 1 clustering of the mapping population, like an F2, 1,695 SNP makers generated 1 1 clustering, like a test-cross, and 2,588 SNP markers generated a single cluster indicating no polymorphism between the parents.
In mapping populations such as RILs, segregation of major QTLs like DRO1 often masks the presence of minor QTLs.
Germin-like protein (GLP) markers were associated with quantitative trait loci (QTL) for resistance to the rice blast pathogen, Magnaporthe oryzae in multiple rice (Oryza sativa) mapping populations.
We also constructed a bridge map to compare the individual linkage maps using markers that segregated in both mapping populations.
CG obtained the mapping populations.
Association mapping offers multiple benefits over traditional QTL mapping populations.
Two mapping populations were used to map the polymorphic markers.
Two independent backcross mapping populations were generated for QTL mapping.
Therefore, it seems like a realistic possibility to identify candidate genes underlying a QTL by using the high throughput expression data and the complete genome sequences of numerous Arabidopsis accessions that were used to construct mapping populations.
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