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A mapping population involving one extreme parent of subpopulation J4 and one from J6 is another option if the objective is to determine whether the phenotypes observed in the various sub-populations are allelic.
TD055 mapped in a SSC QTL (brix2.2) described in the mapping population involving cherry tomato (Saliba-Colombani et al. 2001; Lecomte et al. 2004).
A relatively cheap, SNP array with a limited number (as few as 20 per chromosome) of well distributed markers will be an excellent tool for a first fast characterization of any new interspecific mapping population involving S. lycopersicum.
Therefore, a genome-anchoring strategy was developed that included the generation of a segregating bi-parental mapping population involving DM as a parent, and generation of a dense STS-based genetic map.
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The development of mapping populations involving accessions that do not carry known mutations in BADH2 as a parent could help solve this issue.
To find out effective rare alleles, bi-parental mapping populations involving these lines will be needed to validate the function of rare alleles and also to understand their genetic control mechanisms (Semagn et al. 2010).
However, SD between loci on chromosomes I and V biased toward retention of the same parental allele at both loci has been observed in a number of mapping populations involving a range of accessions (e.g., [ 32, 33] and there is some evidence that this may be due to genomic incompatibilities [ 34]. *seven RILs were removed from each population due to low genotype success.
Here we use the term "experiment" to describe a specifically designed study using the Bala × Azucena mapping population and involving a number (between 1 and 8) of independent screens where each screen may or may not have replication.
comm).. From these SNPs, a mapping population of 417 individuals involving a factorial cross design of 3 × 2 crosses was screened using a 384-plex GoldenGate Genotyping BeadArray Illumina platform ([ 92], Illumina Inc., San Diego, CA, USA) at the CMMT Genotyping and Gene Expression Core Facility, Centre for Molecular Medicine and Therapeutics, Vancouver, BC.
However, this approach usually involves excessive time for generation of larger advanced generation mapping population and efficient marker genotyping data for fine mapping the target long QTL regions.
Common schemes for building a genetic map involve mating parents to generate a F2 intercross, F2 backcross, or recombinant inbred line mapping population.
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