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The polymorphic markers were then genetically mapped in a subset of the mapping population containing 140 individuals.
Two diverse advanced homozygous inbred lines of cabbage, 01 88 and 02 12, were used as the parents to develop a doubled haploid (DH) mapping population containing 165 lines.
In the present study, we consequently performed a large-scale identification of genome-wide SNPs derived from RAD-seq of a Japanese flounder mapping population containing 2 parents and 216 offspring.
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The simulated mapping population contains the same genotype data for 184 RILs.
It is already known that the KxO mapping population contains a relatively high frequency of heterozygotes for some markers [ 9].
The combined map, which was based on four F2 mapping populations, contained 502 markers spanning a total distance of 717 cM.
Both of these outbred mapping populations contain more genetic variation than do mice derived from crossing classical inbred lines, and they also have more recombination, permitting traits of interest to be mapped with improved resolution (Yalcin et al., 2010).
The nested association mapping (NAM) population contains 25 diverse lines (25DL) across today's maize germplasm (McMullen et al. 2009), which was used to facilitate the maize Hapmap2 project by generating NGS data from 103 inbred lines including the NAM population (Chia et al. 2012).
We mapped 10,480 SNPs into a genetic linkage map using a mapping population that contained 113 progenies generated from a cross of egusi and sweet watermelon.
Hand et al. [ 11] found that approx 22% of SNP positions that they surveyed for ten independent genes between a number of mapping population parents contained polymorphisms in both sub-genomes, generally exhibiting the same nucleotide variants (eg AT[O]AT[P'] using their nomenclature, where O and P' indicate the respective subgenomes).
Primer specificity for 48 transcripts was not seen when we attempted to map SCARs to the ASGR using a F1 population containing many P. squamulatum chromosomes.
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