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The ePSTs are generated using a proteogenomic mapping pipeline implemented in Perl.
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[See Additional file 1 for Supplementary Methods for full details.] The reads were mapped to the human genome and to the RefSeq database of well-annotated RNA sequences using the ExpressSeq pipeline implemented on a Windows Desktop.
A detailed outline of our pipeline is sketched in Fig. 2. Fig. 2 Ptychographic streaming pipeline: streaming pipeline implemented at the ALS for ptychographic imaging.
Figure 1 summarizes the research pipeline implemented and main outcomes obtained.
Figure 1 describes the overall pipeline implemented in ABACAS.
VSEAMS is a software pipeline implemented in R and Perl.
The information extraction pipeline implemented in the tool is based on Apache UIMA [ 38].
Gene annotations were performed using an automated pipeline implemented by MaGe [ 70, 71].
An outline of the bioinformatics pipeline implemented for ANT sequences analysis is illustrated in Figure 1.
The pipeline implemented in MONSTER and sketched in Figure 1 has been applied to lincRNAs here.
The design consists of a pipeline implementing three primary operations buffer, reorder and compare.
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