Exact(15)
Attempts were made to further investigate regional patterns by computing and mapping percentages and percentage changes for each category (single and never-married) using 2003 and 2013 data.
Mapping percentages are relative to Paired l32q20.
Similar mapping percentages were achieved using another mapping tool, Bowtie2 [ 28] (data not shown).
Reads that mapped to intergenic or non-coding DNA were not included when determining these mapping percentages.
We compared differences in unique read counts and mapping percentages between rheMac2 and MacaM assemblies using a paired T-test.
To increase the mapping percentages of tag sequences, two different reference databases were employed, which included G. raimondii genome and G. arboretum genome.
Similar(45)
This was to accommodate systematic sequence quality and mapping percentage differences from different datasets.
We identified the 100 genes with the lowest read mapping percentage (Additional file 4: Table S4).
The high mapping percentage suggests a high similarity between these isolates, at least at the transcriptome level.
The most divergent line (A1-73) had the lowest mapping percentage of any of the of the A-genome diploid accessions.
The drop in mapping percentage, while apparently worrisome, can still be satisfactory as long as it does not impact on the accuracy of the downstream SNP calling.
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