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Together these data suggest that LTR1/HUERS-P2 family of LTR element might be subject to an active piRNA ping-pong cycle in human testis.For SVA elements, the mapping patterns were largely congruent among the six subfamilies.
When examining the top 50 alignments carefully, two distinct types of mapping patterns were observed among them, where each of the top 50 pairs belongs (with slight variations) to one of these two types (33 to Type 1 and 17 to Type 2).
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This suggests that read mapping patterns are likely to be influenced, or even determined, by the secondary structure of the parental RNA.
Most of the miRNAs with stem-loop structures and typical mapping patterns are highly conserved in the plant kingdom including miR156, miR159, miR160, MiR166, miR167, miR172, miR319 and miR395 [ 26].
Management zones based on geostatistical semivariograms and interpolated map patterns were practical for water management planning in the naturally rolling environments.
The map patterns were carefully interpreted manually in all cases.
As shown in Fig. 2A, similar heat map patterns were observed for the total and the cycling gene datasets.
In other cases, when there were obvious differences in expression between isozymes, two of the most contrasting heat map patterns were displayed.
The contribution of high-frequency ingredients to the map pattern is revealed.
Thus, EMG patterns were mapped to discrete font characters.
These patterns were mapped onto the phylogenetic tree of the respective ATGC (see Methods) and employed for the evolutionary reconstruction using Count, an ML method based on a phylogenetic gene birth-and-death model [ 22].
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