Sentence examples for mapping orientations of from inspiring English sources

This algorithm identifies the 5′ coordinates and mapping orientations of each read pair by considering gaps and jumps.

However, if the read pair spans an inversion breakpoint, the mapping orientations of the reads will be observed as either ++ or −− [See the Supplementary Material in Hormozdiari et al. (2009) for a full case study].

We also investigate the mapping orientations (signs) of ligated fragments that create different contact types (Table 3).

The availability of a high quality C. elegans reference genome allowed the quality of the libraries to be assessed by checking various mapping metrics such as number of reads mapped, orientation of mates in a pair.

More formally, (1) where the pair (Lℓ pe i ), L r (pe i )) represents the map location (i.e. both start and end loci) of the left end read of pe i, (Rℓ pe i ), R r (pe i )) is the mapping location of the right end read of pe i, and or pe i ) represents the map orientation of both ends.

The whole duck assembled sequence will have to be ordered using the whole genome RH map which will be constructed in our laboratory, in conjunction with other mapping methods, such as genetic and/or BAC contig physical maps, the latter allowing finer mapping and orientation of small scaffolds.

Functional domain mapping and orientation of the E7 and Hsp70 in the fusion gene may have clinical implications for the design and optimization of Hsp70-based DNA vaccines.

The results show that drug rescue of arginine mutants can be a useful approach for mapping the orientation of P-gp TM segments.

This method – combined with precise mapping and orientation of tissue by the Mohs surgeon reading the pathology – allows all tumour extensions to be traced.

However, by mapping the orientation of Fz-EYFP in clones in the dorsal half of the wing disc, we detected a change in Fz-EYFP orientation close to the pouch-hinge boundary (which will later become the proximal wing) in both mutant backgrounds, such that it no longer points distally but follows the pouch-hinge boundary.

Prior to construction of an integrated map, the orientation of each linkage group in the linkage map of Shirasawa et al. was adjusted in accordance with the linkage map using the consensus SSR markers.