Sentence examples for mapping of short from inspiring English sources

These BWT-based sequence alignment tools provide fast mapping of short reads of DNA sequences against a reference genome sequence with small memory footprint using a data structure like FM-Index [18] built atop the BWT.

For certain tasks of bioinformatics workflows, such as sequence alignment and mapping of short reads which are also incidentally some of the most computationally expensive processes, this approach can allow for a very high degree of parallelism in multiprocessor architectures and distributed computing environments.

RNA-Seq analyzes complementary DNA (cDNA) by means of highly efficient, next-generation DNA sequencing methods and subsequent mapping of short sequence fragments (reads) onto the reference genome.

As quantitative transcript profiling by massively parallel sequencing is potentially affected by the accuracy of the mapping of short reads, we performed an in silico analysis to evaluate this.

We have created a web portal, TagScan at http://www.isrec.isb-sib.ch/tagger, for rapid mapping of short oligo sequences to large sequence databases comprising full genomes or transcriptomes (i.e. full length mRNA sequences from human, mouse, bee, drosophila, dog, rat, cow, and chimpanzee).

Bioinformatic analysis of RNA-seq data should involve mapping of short reads to the genome [ 17].

In contrast, analysis of differential gene expression by mapping of short-read sequences to the reference transcriptome appears to be a robust strategy.

Summary: Accurate and complete mapping of short-read sequencing to a reference genome greatly enhances the discovery of biological results and improves statistical predictions.

Ostensibly, unique mapping parameters are employed to create FPKM values while avoiding potential confounding effects of including genes that are erroneously counted as "expressed" due to cross-mapping of short reads to multiple loci.

The right-hand maps show the 95% posterior probability maps of short birth intervals, which indicate the statistical significance associated with the total excess risk.

For the wheat chromosome 1A, 755 and 1,231 genes were placed on the physical map of short and long arm, respectively [ 41, 42].