Briefly, the mapping process includes mapping of RefSeq accessions to UniProtKB accessions using ID mapping services provided by Protein Information Resource and UniProt (40), followed by pairwise alignment of the sequences to map the positions.
The mapping of database accession numbers and cross linking is carried out by using the base URL of the database and appending the appropriate tags (referring to the entry in the database) to generate the URLs to relevant entries.
The analysis of segregation data for SSR and dCAPS markers and linkage map integration were carried out using the F2 mapping population of accessions Miyakojima MG-20 and Gifu B-129, which were previously used for construction of the fine genetic linkage map.
We used a diverse mapping set of accessions typed at approximately 213,000 SNPs to finely map the genetic loci, using genome-wide association studies (GWAS).
Soon it will have to start yielding up timetables, albeit ones that could still be altered, for ending the negotiations and even for letting in the first applicants.Within the European Commission, the Union's executive arm, which manages the negotiations on behalf of the 15 countries already in the club, the official talk is still of "road maps" for accession rather than target dates.
Efforts are currently underway to develop a physical map of this accession (http://wheat.pw.usda.gov/PhysicalMapping, http://www.wheatgenome.org/).org/
Sequencing of the amplified product (450 bp) confirmed exact location of amplification and sequences were exactly identical to IS 900 sequences of MAP K10 (ACCESSION number EF015397).
Sites that are polymorphic between accessions represent the so-called intragenomic SNPs [ 23] that are especially versatile for genetic mapping and discrimination of accessions.
The number of reads mapping to each accession for each sample is shown in Table 1.
We have annotated localization, biological process and functional class of proteins by mapping gi accession numbers to HPRD accession numbers [ 56].
The locus order on the consensus map correlated highly with that of accession-specific maps.
