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Then, the atom mapping numbers of matched product atoms were updated accordingly.
Finally, the atom mapping numbers of each atom were re-assigned in ascending order, maintaining the equivalent atoms for the CLCA and MWED algorithms.
We checked the mapping numbers of the mononucleosomes and the TSSs of Afu2g03390.
We compared the mapping numbers of the mononucleosomes and the TSSs of Afu2g03390 between in the TSA-treated and untreated cells of A. fumigatus.
The profiles of the nucleosome mapping numbers of the elp3 and hos2 disruptants were so similar with each other but were different from that of the control (Fig. 3).
To compare the conservation levels of the mononucleosome positions around the TSSs, we calculated the squares of Pearson's correlation coefficients between the profiles of the mononucleosome mapping numbers of the TSA-treated cells (15-min treatment with MNase) and the untreated cells at 300 nt downstream and upstream of the 557 TSSs (with more than 1000 sequence tags).
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In Blast searches, number of matches; in mapping, number of reads mapped.
A secret key of 161-bit, comprising of the initial conditions and system parameter of the chaotic map (the standard map), number of iterations and number of rounds, is used in the algorithm.
The output from cBrother analyzed was the MAP number of breakpoints and mosaic structure, namely the most frequent combination of topologies and breakpoints.
Figures 14 (a)–(c) show histograms of the estimated binding probabilities, maximum a posteriori (MAP) number of binding sites and the expected number of binding sites, respectively, over all 5.4 million TF-promoter pairs.
Similarly, zero binding sites is by far the most frequent case among the MAP number of binding sites (Figure 14 (b)) and the expected number of binding sites are also heavily biased towards small values (Figure 14 (c)).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com