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YL conducted genetic mapping in cucumber.
LY, YL and XH conducted linkage mapping in cucumber.
In addition, comparative fluorescence in situ hybridization (FISH) mapping in cucumber and melon [ 70] suggested that centromere repositioning occurred during the evolution of cucumber chromosomes.
Only scaffolds > 500 kb in length were used for comparative mapping in cucumber because the contiguity of the cucumber genome sequence is currently low.
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The availability of high-density maps in cucumber would facilitate whole genome sequencing and positional cloning, enhance MAS, and provide opportunities to investigate synteny among cucurbit species (e.g., cucumber and melon).
In this study, we described the development of highly polymorphic SSR markers using whole genome shotgun sequences leading to the construction of the first high-density genetic map in cucumber.
In the present study, we report an SNP-based genetic linkage map in cucumber using SLAF sequencing technology.
This study is the first attempt to conduct QTL analysis using a NGS-derived genetic map in cucumber.
Secondly, if a marker had not been mapped in cucumber but the cucumber scaffold possessed markers that have been mapped in the cucumber genome, then that marker was assigned to the same location as those markers.
Firstly, 79 of the 401 markers had already been mapped in cucumber chromosomes, and they could be directly assigned to specific chromosomal location(s) of the cucumber genome.
[ 8] Classical genetic analysis found that PMR in cucumber was linked with the D locus for dull fruit color [ 9– 11] which has been mapped in cucumber chromosome 5 [ 12].
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