AR, BU, ML and MS constructed an initial automated mapping file.
The mapping population was successively genotyped with all the 107 anchored markers, and a linkage map was constructed (Additional file 3: Figure S3).
(XLS 104 KB) 12284_2012_38_MOESM4_ESM.ppt Additional file 4: Physical map constructed using 307 SNP markers.
The details of the SNP markers mapped on BTA19 and 29 are provided in Additional file 1. RH maps were constructed using the comparative mapping approach of CarthaGène software [ 17- 19] which allows us to simultaneously exploit the RH data and the knowledge of a known related order.
The circular map was constructed from the xml-file as png-graphic, using the CGVIEW main function.
As a result of incorporating BAC-end and contig sequences, an integrated HAPPY map was constructed [Figure 1; Additional file 4].
The detected SNPs were presented in Additional file 7. A bin map was constructed with 35,128 recombination breakpoints for all lines, in which each line contained an average of 125 breakpoints.
The mapping file is Gmax_AFFY_09 (1.0).
An integrated map was constructed by using both genotype files as input, with paternal and maternal maps generated by using only one input file.
A framework map was constructed using 305 SSR markers (Additional file 3).
