Sentence examples for mapping file provided from inspiring English sources
Probeset from the two Illumina platforms were mapped to a common probeset Id using a mapping file provided by Illumina.
In order to use the mapping file provided by the MapMan homepage (Zm_GENOME_RELEASE_09, http://mapman.gabipd.org), gene identifiers were converted into transcript identifiers by adding the extension "_T01".
For tracking down the experimental conditions of the different arrays we used the mapping file provided and with assistance from the curators of TAIR the codes were converted into matching experimental conditions that can be found on the website.
To map mouse and rat genes to their human orthologs, we used mapping files provided by RGD and MGD.
The mapping of Ensembl IDs to Affymetrix probe set IDs was retrieved from mapping files provided by Affymetrix (http://www.affymetrix.com/estore/).
Mouse and rat genes were mapped to their human orthologs using the mapping files provided by MGD (ftp://ftp.informatics.jax.org/pub/reports/HOM_MouseHumanSequence.rpt) and RGD (ftp://rgd.mcw.edu/pub/data_release/RGD_ORTHOLOGS.txt), respectively.
The gene ontology (GO) terms were assigned to each unigene based on the GO terms annotated to its corresponding homologues in the UniProt database, and based on the InterPro and Pfam domains using interpro2go and pfam2go mapping files provided by the GO website, respectively [ 98].
The gene ontology (GO) terms were assigned to each unigene based on the GO terms annotated to its corresponding homologues in the UniProt database [ 71], as well as those to InterPro and pfam domains using interpro2go and pfam2go mapping files provided by the GO website [ 72], respectively.
The Enzyme class was also directly linked to the Pathway class by parsing the KEGG [43] mapping files, thereby providing links to their potential roles in cellular processes.
Additionally, the transformation of instances of the concept experiment-specific gene identifier to instances of the concept KEGG identifier was carried out using a platform mapping file (SOFT format), also provided as input to connector C2.
Gene Ontology (GO) terms were then mapped on the blast results using annotation files provided by the GO Consortium.
