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Of these 87 incongruities between FvH4 and Fvb, 91% were supported by more than one polymorphic marker (median = 18 polymorphisms), suggesting they are unlikely to be mapping errors in Fvb, although some could represent assembly errors in FvH4.
The low linkage disequilibrium between adjacent DRGA0009645 and MARC0023136, which were located 22 kb from each other, may be due to mapping errors in build 9 (Sscrofa9, http://www.ensembl.org).org
Recent efforts to identify RNA editing events in the human transcriptome using deep sequencing approaches have indicated that many of the identified RNA DNA differences could be explained by errors in sequencing or mapping errors in the assignment of RNA-Seq reads to the reference transcriptome.
It was measured that the mapping errors in X and X are < 20 μm which means < 2%.
The result presented in Fig. 8 verifies the previous finding, and both mapping errors in X and Y within the range of 1 mm are < 2%.
We also found evidence of read mapping errors in 8469 loci where more than one selfer appeared heterozygous.
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This method identifies only two discordant SNVs from the technical replicates of each sample, suggesting that much of the discordant variant calling using BWA/GATK may be introduced by mapping errors, particularly in regions of low complexity [ 9].
Since tandem repeats are often missed by paired-end short-read sequencing technologies due to mapping errors, leading to changes in coverage depth in and around tandem repeats (30), we assessed coverage depth within the core 9p linkage region.
In addition, mapping errors resulting from linking brain region mentions to target regions in BAMS reduces accuracy (French and Pavlidis, 2011).
For each frog, we analysed the X- and Y-coordinates of each position in A rcGIS 10 (ESRI), after averaging points that were spaced less than 1 m apart (estimated mapping error in the field).
Monte Carlo (MC) simulations offer a practical, empirical method of accounting for potential map errors in broader ecosystem assessments.
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