Sentence examples for mapping efficiency of from inspiring English sources

The improved index increased mapping efficiency of A-genome reads to the D-genome reference sequence.

In this work, we use a sequencing strategy called genome-wide hairpin sequencing of bisulfite-treated short reads to investigate factors that may adversely influence mapping efficiency of bisulfite reads [ 15].

In this report we compare the mapping efficiency of reads of different length.

Nevertheless, clustering of substitutions and indels [18] will probably further reduce the mapping efficiency of a large number of reads.

Already the insertion of a single base dramatically lowered the mapping efficiency of BLAT (from 97% to 67%).

Table 6 compares the mapping efficiency of MAQ and PerM at different sensitivity thresholds.

(Sequencing error set to less than 1% had very little difference in the mapping efficiencies of 1% error).

Mapping efficiencies of the subsampled data were high and equal between libraries (>91% for all libraries; supplementary table S3, Supplementary Material online).

SNP-tolerant mapping uses these SNPs to improve mapping efficiencies of sequence reads from allopolyploid genomes, but previous efforts (e.g., Brassica napus and Tuber aestivum) have not used SNP-tolerant mapping.

This is largely due to difficulties in correlating sequencing depth for a given mutation with its actual abundance, a problem that stems from experimental limitations including amplification bias and differential mapping efficiencies of disparate genomic loci.

To exclude bias due to intragenomic variation in mapping efficiency, the number of average sequence reads was normalized to the number of sequence reads obtained from control (input) samples to which MBD protein was not applied.