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The mapping coordinates of aligned reads were then used to retrieve genomic segments to evaluate for typical pre-miRNA structures.
For each gene, the genomic coordinates of exons, introns, 5/3′UTRs and extensions are stored in BED format and intersected with the mapping coordinates of the clusters.
Next, read pairs with exactly the same mapping coordinates of forward and reverse tags were marked as clonal and excluded from further analysis.
Then, mapping coordinates of orphaned reads along with various SAM fields were extracted and used as an input to insertion site scoring scheme for significant cluster detection.
Similarly, queries to retrieve variants from the Variation database are parameterized with the Core sequence identifier and desired range coordinate and return the properties and mapping coordinates of variants within this range.
The mapping coordinates of each read were overlapped with the refseq annotation track from the UCSC table browser (http://genome.ucsc.edu/cgi-bin/hgTables?command=start) to quantify mature mRNA expression.
Similar(53)
(The name twofour54 refers to the map coordinates of Abu Dhabi).
When I left Moscow, the city of my birth, at 20, the country still carried the name and the map coordinates of the Soviet Union.
The map coordinates of each individual color or combination are derived from emotional assessments by human participants.
Remote sensing image rectification is commonly done by applying a polynomial trend mapping (PTM) model to image coordinates and map coordinates of ground-control-points.
Ridenhour's letter included details that made the allegations credible and worthy of investigation, including map coordinates of My Lai, witness names and the identities of the perpetrators, according to a congressional probe.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com