Sentence examples similar to mapping chip from inspiring English sources

To assign genes to mapped ChIP peaks, we used intersectBed and closestBed and subsequently manually pruned the gene lists.

We define a list of uniquely mapped ChIP-seq DNA sequences observed in a given ChIP-seq experiment as the Chip-seq library.

In the absence of a reference genome, we mapped ChIP-seq data to the clusters of the C. aquatica HG genome for cluster-based repeat identification.

In order to control for such errors, we used only uniquely mapped ChIP-seq reads, thus excluding fragments exhibiting dual genomic/mtDNA localization.

(A ) The mapped ChIP-Seq signals for the listed modifications were derived from the total signal over the gene-body (green) or 2.5 kb promoter region (red).

We mapped ChIP-Seq and ChIP-Chip derived transcription factor binding sites obtained from ENCODE, CISTROME and Kittler et al. to all RefSeq gene promoters in order to calculate in-silico ChIP-Seq binding enrichment.

Consistent with these data and those published in a previous report [ 18], analysis of the uniquely mapped ChIP-seq reads reveals a high level of H3K9me3 in the regions flanking IAPEz, MusD and MLV ERVs.

The mapped ChIP-seq datasets were downloaded from T2G GIS DB (http://t2g.bii.a-star.edu.sg; see also NIH GEO ID GSE 11431).The extended ChIP-seq DNA fragments were clustered and the number of overlapping fragments were summed at each locus and used to construct empirical frequency distribution of TF-DNA binding.

The genome-wide binding profiles of hundreds of proteins have been mapped using ChIP-chip and ChIP-seq in organisms ranging from bacteria to humans.

Transcriptome analysis using SAGE and microarrays has been performed in various tissues [8], [9], recently in combination with chromatin immunoprecipitation based mapping (ChIP-chip) of genomewide GR occupancy [10].

For mapping ChIP-Seq data to genomic scaffolds, we considered only unique hits (-m 1 option).