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Consequently, we can quantify the uncertainty of the mapping by calculating the product of the posterior variance across all dimensions.
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We generated a predictive map of salamander abundance for each scenario over time, and summarized each map by calculating mean salamander abundance and the mean colonization distance (average distance from map cells with low predicted abundance to those with relatively high abundance).
GECs were derived one by one from the JPL TEC maps by calculating the area integral of TEC in terms of the map grid according to Afraimovich et al. (2008).
The F map was generated from the two WRSS maps by calculating the F-statistic [Eq. (5)] at each voxel.
We constructed firing rate maps by calculating the total number of spikes for each pixel and then dividing by the dwell time for a particular session.
LPmerge assessed the goodness of fit of the composite map by calculating a root mean squared error (RMSE) per LG, by comparing the position (in cM) of all markers on the composite map with that on the component maps.
Additionally, the insertion sites could be mapped by calculating the recombination rate between different P-element insertions [ 25], or directly identified by techniques such as inverse PCR [ 26] or splinkerette PCR [ 27].
Estimates of region-specific longitudinal volumetric change were obtained from the baseline and follow-up RAVENS maps by calculating the intensity difference at each voxel between the two time points.
Once pre-processing was completed, REST software (http://resting-fmri.sourceforge.net) was used to obtain ReHo maps (by calculating Kendall's concordance coefficient value to measure the similarity of the ranked time series of a given voxel to its nearest 27 neighbor voxels in a voxel-wise way).
We first evaluated the performance of the mapping methods by calculating area under ROC at various CNR.
In addition, sscMap includes a refined method in the mapping process by calculating p-values at the level of individual reference profiles, which consequently helps to control false positive findings.
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