Sentence examples for mapping and downstream from inspiring English sources

Read mapping and downstream analysis was done using BS-Miner.

Such data cleaning enabled by the SUGAR would improve quality of sequence read mapping and downstream analyses.

The SOLiD platform produces short reads (35 bp) encoded in a color-space format, and Applied Biosystems used their realignment pipeline specially designed to take advantage of this format for color-space read mapping and downstream analysis including SNP detection.

After sequencing we obtained 329,576,088 raw reads (from 33,213,610 to 38,909,488 reads per sample), each 101 bp in length that were quality-controlled (quality score higher than Q36 where Q40 is the maximum value) before assembly, read mapping and downstream analyses.

We performed BAC FISH on a TMA of 151 separate cervical SCCs, using differentially labelled pools of BACs mapping upstream and downstream of LPL.

For MAPK signaling pathway, the signal is transmitted by G protein

In this work, two origins were mapped upstream and downstream of the DMPK (CTG n CAG n repeat in both control and DM1 human fibroblasts.

Peptides mapping to upstream and downstream of genes suggest changes to CDS boundaries of genes.

Moreover, they observed that miR-146 negatively regulates proinflammatory NF- κB-, MAP kinase-pathway, and downstream EGR transcription factors.

Second, we investigated upstream pathways by measuring ERK MAP kinase activity and downstream pathways by determining the levels of the putative targets MMP-1 and MMP-7.

To evaluate poly(A) site usage, densities of reads mapped to upstream and downstream regions were compared, as illustrated in Supplementary Figure 3.