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Probes which could not be mapped were excluded from the analysis.
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We think this is unlikely because in the MSG pipeline, reads that cannot be uniquely mapped are excluded.
The other maps were excluded from this analysis because they had no or very low signals.
Other layer maps were excluded from the analysis, because there are very little signals, if any, in other maps, and not reliable.
Accordingly, to avoid confounding effects from spontaneous recovery processes on stem cell treated animals, those animals with an exclusively striatal lesion but intact cortex on T2 maps, were excluded from our study at this point, 48 h after stroke induction (20 animals excluded, 39% of the total n = 51 and 57% of the 35 survivors) (see Fig. 2).
The 63 cases with technical failure in microarray mapping were excluded from the study.
In addition, probe sets without an Entrez ID-mapping were excluded.
Groupings of markers eliminated during this or a subsequent round of mapping were excluded from further analysis.
The 132 dominant AFLP and RAPD markers resident on the RIL map were excluded from map integration because they were deemed ineffective for defining cucumber-melon synteny.
Maps of chromosomes with fewer than two common markers to the reference map were excluded before the creation of the consensus map.
Chromosomes connected with fewer than two common markers to the reference map were excluded before the creation of the consensus map.
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