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The Tn7 transposition events were then mapped using two complementary assays.
Areas of fertilizer application and manure production were identified and mapped using two different multi-stage processes.
Leaf and neck blast QTLs were genetically mapped using two recombinant inbred line (RIL) populations derived from KDML x JHN (Noenplab et al. 2006) and JHN x IR64 (Sreewongchai et al. 2010).
Linnemann et al. compared scaffold/matrix attachments mapped using two different isolation methods and found that only 52% of S/MARs between methods corresponded to each other [58].
BACs were mapped using two methods.
The only other report where SAMPL markers have been used for genetic linkage mapping in conifers is for Norway spruce [ 8], where 20 SAMPL markers were mapped using two primer combinations.
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The epitopes recognized by the 55 remaining mAbs were mapped using three experimental approaches: i) cross-competition against mAbs of known specificity or soluble CD4; ii) binding to gp120 mutants or gp41 constructs representing different conformational intermediates; iii) Pepscan analysis.
These EST-SSRs, along with other PCR-compatible markers, were then mapped using four pearl millet RIL mapping populations.
A total of 1141 of the 5500 SNPs were mapped using three mapping populations including the Minsoy × Noir 1 with 164 RILs, Minsoy × Archer with 89 RILs as well as the Evans × PI 209332 with75 RILs [ 8].
To dissect the genetic basis for ILAU in maize, QTL were mapped using four sets of recombinant inbred line (RIL) populations derived from crosses (Yu82×Yu87-1, Yu82×Shen137, Yu87-1×Zong3, and Yu537×Shen137).
Read data were mapped using three analyses to identify the genomic position of the SNPs, indels, and rearrangements (Fig. 1): (i) BWA and MAQ for mapping analysis using raw read data; (ii) Velvet and MUMmer for mapping analysis using de novo assembled contigs; and (iii) BreakDancer for rearrangement analysis such as IS movement.
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