Sentence examples for mapped to rice from inspiring English sources
Sequences of both RFLP probes and SSR primers were mapped to rice genomic sequence locations using IRGSP Pseudomolecules build 4.0 (http://rgp.dna.affrc.go.jp/J/IRGSP/Build4/build4.html).jp/J/IRGSP/Build4/build4.html
The high quality reads were mapped to rice reference sequence (MSU 6.1) using Tophat 3.1 (Trapnell et al. 2009), with default parameters.
Within the 57,195 designed probe sets in the Affymetrix rice genome array, there are 52,697 probe sets mapped to rice genes in TIGR rice pseudomolecules.
The resultant clean reads were mapped to rice and U. virens genomes using SOAP2 [ 83].
Unique reads mapped to rice tRNA, rRNA, snRNA, snoRNAs [ 58], known miRNAs [ 59] and TIGR Oryza Repeat Database [ 60] were removed.
Subsequently, the Ds insertion in the bfl1 mutant was mapped to rice chromosome 7 corresponding to PAC clone P0625E02 (GenBank Acc No. message URL http://www.ncbi.nlm.nih.gov/entrez/query.fcgi cmd=Retrieve&db=nucleotide&list_uids=34395191&dopt=GenBank&term=ap004570AP004570).fcgi cmd=Retrieve&db=nucleotide&list_uids=34395191&dopt=GenBank&term=ap004570AP004570
Retained high-quality pair-end reads of rice for each sample were mapped to the rice genome of the Rice Genome Annotation Project (RGAP) at MSU [ 53] using TopHat [ 54], and assembled with Cufflinks [ 55] to construct unique transcript sequences using the parameter –g –b –u –o.
The retained high-quality pair-end reads of rice for each sample were mapped to the rice genome of RGAP at MSU[ 71] by TopHat[ 72] and then assembled using Cufflinks[ 73] to construct unique transcripts sequences, using the parameter: -g -b -u -o.
All the homologous barley FLcDNAs were mapped to the rice pseudomolecule (IRGSP built 3) to show the homology to rice locus, mRNAs and CDS.
In total, 216,942 FSTs have been identified and mapped to the rice genome.
Fifty-three million reads obtained from 16 libraries under various phosphate stress and recovery treatments were uniquely mapped to the rice genome.
