Sentence examples for mapped to barley from inspiring English sources

Currently, over 20 quantitative trait loci (QTL) for quantitative basal resistance to leaf rust from five different mapping populations have been mapped to barley chromosomes [ 11- 16].

This included 63 barley EST sequences mapped to barley Hv1H (hv1H_os05_2) and 92 of Hv3H (hv3H_os01_2, see Table S3 of Additional file 1).

The RAP2 rice pseudomolecule [ 23] was used as a basis for homology search with the 372 contigs identified by ESTs mapped to barley chromosome 3H (see Additional file 2).

Since the GPert mutation in Golden Promise was previously mapped to barley chromosome 5H as an allele of the ari-e locus [ 7], we initially used wheat-barley addition line for 5H [ 26] to determine if any of the regulated genes identified from array analysis map to 5H.

Trimmed Hi-C reads were mapped to the barley pseudomolecule sequence with BWA mem (version 0.7.12 66.

Out of the 738 probes assigned to BAC contigs of wheat chromosome 3B, 308 (42%) were mapped to the barley neighbour map including 209 on chromosome 3 H and 99 on other chromosomes.

The corresponding sequence in rice was obtained from the Rice Genome Annotation Project (http://rice.plantbiology.msu.edu) and mapped to the barley genome (Morex assembly [ 70]), wheat draft genome (LCG assembly [ 71]), and Arabidopsis genome (TAIR10; http://www.arabidopsis.org).org

The draft genome sequences of T. urartu and Ae. tauschii were used for the anchoring of A- and D-genome markers, whereas B-genome markers were directly mapped to the barley genome.

Sequenced Illumina reads were mapped to the annotated barley genome assembly of the Morex variety [ 67] using Bowtie2 v2.0.5 [ 68] and TopHat v2.0.6 [ 69].

A small fraction of the partially assembled metagenome samples (on average 3.02% of the reads) was mapped to the annotated barley genomic sequences, and the corresponding contigs or singleton reads were removed (Table S2; Supplemental Experimental Procedures).

Mapping to barley homologs has two major impacts: It drastically reduces the number of analyzed transcripts in the analysis and also wheat-specific genes with no barley homologs may be lost.