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Due to the genetic variability inherent within a species, it is possible that a gene sequenced from one germplasm accession may not be mapped in either of the two fully sequenced genomes from O. sativa, due to insertion/deletion polymorphism and gene family expansion/contraction.
Windows where fewer than 250 reads were mapped in either sample were excluded.
Althoughthe RIKEN cDNA marker Q8C5Y2 has not been accurately mapped in either Rattus or Mus, BLAST results indicated intervals between Q8C5Y2 and Usp29 at 26.4 Mb for the Rattus genome and 37.3 Mb in the Mus genome.
Some QTL could only be mapped in either the ADR- or in the Inra-design (not confirmed within this study).
Based upon the plots of genetic distance on physical distance of the SNPs in Wm82.a2.v1 and mapped in either the WP or EW population, the regions with high and low recombination rate were defined.
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Only few Prx genes had previously been mapped in barley, either as RFLP markers, viz.
In the absence of reliable antibodies for the GLP-1 receptor, the targets for GLP-1 in the brain have been mapped in rat either by identifying GLP-1 binding sites [ 26] or by in situ hybridisation for GLP-1 receptor mRNA [ 17].
The only exceptions to this correlation among the species we studied are C. guilliermondii and D. hansenii, which lack MSH4/MSH5 but do not show deep troughs at centromeres (centromeres are not mapped experimentally in either of these species, but neither of them shows deep troughs anywhere in its genome; supplementary fig. S2K, Supplementary Material online).
The Fragaria and Prunus ESTs found to be polymorphic in the parents of the Fragaria mapping population were either sequenced in the Fragaria bin set and bin-mapped, or mapped in the whole FV×FN population when clear intron length polymorphisms were detected.
Altogether, of the 9,001 pairs of reads that mapped to the mitochondrial genome, >99% can be mapped in a consistent fashion to either the initial assembly or some alternative arrangement derived from recombination involving a large or small repeat.
Markers originally mapped in the full populations of either Prunus or Fragaria, were converted to bin positions before the analysis.
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