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We then compared this map with genomic junctions determined by paired-end sequencing.
The soon-to-be available draft genome sequence of the euchromatic regions of the B. rapa genome does not diminish the importance of genetic linkage maps, as our map will facilitate the alignment of gene-rich euchromatic regions with less gene-dense repetitive regions, thereby helping to confirm and refine the integration of the genetic map with genomic sequences.
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Integration of high-density genetic maps with genomic sequence information will largely accelerate the process of whole-genome assembly in cotton.
Hypervariable microsatellites are a useful source of polymorphic DNA markers for linking genetic maps with genomic sequences, and ultimately with phenotypic variation.
By combining these linkage maps with genomic data, it may be possible to accurately estimate Ne and Ne/ N in many economically important marine species.
This work represents the first steps towards the integration of the high-resolution genetic and cytogenetic map with the genomic sequence in melon and provides more information on genome organization.
This represents the first steps towards the integration of the high-resolution genetic and cytogenetic map with the genomic sequence in melon that will provide more information on genome organization and allow for the improvement of the melon genome draft sequence.
Recently, we have built a physical map with 0.9x genomic coverage using both a BAC library and a genetic map previously developed in our laboratories [ http://melonomics.upv.es/public_files, [ 26]], the first report of such a genomic resource of a Cucurbitaceae species so far.
Analysis of the genetic maps combined with genomic data will assist in the comparison and improvements of these 3 commercially important palms.
Very recently, association mapping performed with genomic, transcriptomic, epigenetic and metabolic data has provided abundant information on the genetic architecture of complex quantitative traits in a number of crop species such as maize [ 15– 19], Arabidopsis [ 20], rapeseed [ 21– 23], and rice [ 24, 25].
This study represents the first steps towards the integration of the high-resolution genetic and cytogenetic maps with the genomic sequence in melon that will provide more information on genome organization and allow for the improvement of the melon genome draft sequence.
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