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In order to develop markers for complete karyotyping of these chromosomes, BAC clones genetically anchored on our reference genetic map were searched for repetitiveness by sequence similarities or FISH analysis.
The 355 N. furzeri markers (average length of sequences: 1219 ± 476 nt) contained in our genetic map were searched using blastn against the medaka genome (version as given above); hits with P < 10−8 were considered significant.
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A set of local maps describing the global map is searched using a two-tiered A∗ algorithm that executes entirely on the limited memory robots.
The maximum of the likelihood map is searched and the corresponding 6 parameters are considered the current best estimate of vertebra pose and orientation.
When the term map is searched for terms relating to category 3, these terms are found mostly in the middle bottom part of the map.
However, all rainbow trout genetic maps were searched for genetic markers found on Chinook salmon genetic maps.
In order to identify loci that were potentially involved in control of HN, these maps were searched for regions where the markers showed distorted segregation ratios by plotting the Minor Allele Frequency (MAF) value for each marker used for map construction against its position on the LG, where MAF lower than 0.35 indicated severe segregation distortion.
About 23%% of the unique reads across libraries mapped to at least one location in the B. dorsalis genome (Table 1).> Mapped reads were searched for homologs of structural RNA sequences in the Rfam database to assess the non-coding RNA composition of the dataset.
Once QTLs were mapped, candidate genes were searched for in the corresponding regions of the apple genome sequence underlying the QTLs.
In order to locate full-length cDNAs on the catfish BAC-based physical map and genetic linkage map, all full-length cDNAs were searched against catfish BAC end sequences (BES) [15] with significance of E-value < 1e-20.
To locate the full-length cDNAs on our previous BAC-based physical map and microsatellite-based genetic linkage map, all full-length cDNAs were searched against catfish BESs by conducting BLASTN with significance of E-value < 1e-20.
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