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The results suggested that LG4 and LG8 of Jan's RFLP map were aligned with SSR-LG6 and SSR-LG15, respectively.
Contigs on the physical map were aligned with the papaya genome sequence assembly through BAC-end sequences (BES).
As a result, 815 marker sequences representing 767 loci on the SY-PM genetic map were aligned with the sequences of A. thaliana for further analysis.
In the first stage the STS markers from the DMDD genetic map were aligned to the DM superscaffolds and used to construct the "backbone" PMs.
SNP markers which identified the Hls locus in the Sanzi x Vita 7 genetic map were aligned with the cowpea consensus genetic map (Table 3).
The markers of the RCZ16_DH genetic linkage map were aligned to the B. rapa genome sequence using their primer sequences; 66 SSR markers and the 415 InDel markers were mapped to a total of 152 scaffolds.
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We incorporated these ideas and additional refinements to solve two common alignment problems: glocal alignment, solved with OPTIMA, where an entire map is aligned to a subsequence of a second (typically in silico) map; and overlap alignment, solved with OPTIMA-Overlap, where the end of one map is aligned to the beginning of another.
Each single-molecule map was aligned to the reference maps by two different alignment algorithms.
In other words, it is as if the mental map is aligned with the environment.
This Jacobian map was aligned to MNI space using the transformational matrix from the segmentation step described above.
The S. viminalis linkage map was aligned to the physical maps and the positions of homologous markers in the different species were shown by lines.
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