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This analysis was performed using Cluster [110] and the resulting expression map was visualized with TreeView [110].
Meta-analysis of our proteomics data and the prostate cancer tissue microarray data was performed using MCM [26], and the heat map was visualized with the genes ranked based on their P- values.
Pairwise LD was estimated using the correlation coefficient (r2) and the LD map was visualized using the snp.plotter R package [55] and was used to identify LD blocks within gene regions.
The cluster analysis was performed on the basis of the ΔΔCT log values, and the resulting expression map was visualized with Treeview using the average-linkage clustering algorithms (Eisen Lab, Stanford University, CA, USA).
The genome map was visualized using the MapSolver software (Opgen).
The resulting expression map was visualized using Java Treeview 1.1.6r2 [ 36].
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Then, the overlaid degree of the link in the group map or difference map is visualized as the thickness of the link as shown in Fig. 5.
The map is visualized using the Google map engine, due to its very large size, and provides a range of detailed information in a dynamic presentation format.
Genotypic data comprised of cowpea varieties and their SNP call for each locus of the cowpea consensus genetic map were visualized using Flapjack software [ 35].
The resulting "ISI return map density function" was visualized in a "heat" color map with cold colors for low values and warm colors for high values.
The distribution of COG4636+ members on the chromosome maps was visualized using a program developed in-house specifically for that purpose.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com