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The marker order in the merged map was retained in the parental maps by inputting this as a fixed order to direct map generation, with progeny then analysed to detect double recombination events.
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For probes with multiple positive pools passing both tests, only those that are found on overlapping BAC clones of the preliminary map were retained.
The smoothing was done so that the noise was suppressed while the shape information from the depth maps was retained.
If a transcript was mapped to multiple genomic loci, then only the best mapping was retained; if more than one nearly identical best mapping existed (difference in BLAT scores < 5%), then the transcript was discarded to avoid ambiguity.
All of the configured data mapping and logical condition mapping are retained.
Paired mappings with a distance > 1 kb were discarded, and paired reads with either only the forward or only the reverse read mapping were retained as single mapping reads.
Although early visual experience is essential for the proper development of visual cortex, Striem-Amit et al. show that the underlying connectivity structure of retinotopic mapping is retained even in congenitally blind individuals.
Bins of co-segregating markers were identified with MSTMap [ 69], and the most informative marker per bin was retained for mapping with MapDisto® [ 70].
For most of the detected order conflicts, the original data of the component populations were re-inspected and, in most cases, it was found that the consensus marker order showed an overall LOD score and probability close to the one present in the single discordant maps; therefore, the consensus marker order was retained.
The map of ROIs for validated cell targets was retained at each focal plane.
If multiple genes map to the same U133P2 ID, only one was retained.
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