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Does the probe map to DNA harboring an INDEL?
Does the probe map to DNA containing a SNP? dbSNP v135 [ 63 ] was used to identify all known single nucleotide polymorphisms.
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Despite experimental procedures that we establish to enrich for RNA viruses, a significant number of sequence reads mapped to DNA viruses both ssDNA and dsDNA.
However, blood feeding induced more than ten-fold changes in the expression levels of the under-represented (<10 reads) 21-nt and 24-30-nt 24-30-nt 24-30-ntNA treadsosons (Additional file 8: Table S6).
We found that blood feeding induced de novo production of genic piRNAs and piRNAs mapped to DNA transposons that became a source of additional piRNAs in adult An. gambiae females.
The first validated relationship is a positive connection between the ribonucleotide reductase RRM2 and the DNA topoisomerase TOP2A, two genes that map to the DNA replication pathway.
Contigs that map to pathogen DNA sequences have been removed.
In addition, this data set has duplicate contigs and contigs that map to pathogen DNA sequences removed.
In contrast to the autosomal cell-free DNA, fragments mapping to mitochondrial DNA lack the 3-mode signature and exhibited a wider range of sizes.
48% of the reads from MCF7 represented repetitive DNAs that were masked by Repeatmasker [ 30], 12% of the reads from MCF-7 mapped to mitochondrial DNA.
Reads mapping to mitochondrial DNA or unassigned sequences were discarded.
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