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Consequently, almost all whole-genome sequencing projects map the sequencing reads onto the human reference genome sequence without performing whole-genome assemblies (Ley et al. 2008).
Both ruminant and sheep genomes were also used to map the sequencing reads, as described by Ji et al. [ 19], who identified several miRNA in the goat mammary gland at early lactation.
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The STAR program with default parameters was used to map the sequenced reads to the reference genome and to find those that spanned exon exon junctions.
Eland_extended algorithm was used to map the sequences to human genome (hg18).
To integrate this genetic map with the BAC-based physical map, the sequences of genetic markers were aligned with BES from the physical map using BLAST.
Longitudinal investigations using structural magnetic resonance imaging (MRI) provide a framework to map the sequence of neuroanatomical changes at all levels of this model.
The second approach attempts to map the sequence reads to a position within a reference genome.
BLAT was used to map the sequences to the reference genome.
In this study, we map the sequence reads to pre-miRNAs rather than the mature miRNAs.
For such a large number of the sequences, BLAST tools are too slow to map the sequences to target genomes.
Using the genetic map, the sequences were assigned to the north euchromatin, the heterochromatin, or the south euchromatin.
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