To evaluate whether the mapped markers were randomly distributed on the linkage map, the linkage groups were divided into 1, 2.5, 5, 10, 20, and 40 cM blocks, and the number of markers per block was counted.
To evaluate whether the mapped markers were randomly distributed on the linkage map, the linkage groups were divided into 2.5, 5, 10, 20, and 40 cM blocks, and the number of markers per block was counted.
As another way to validate the physical map, the linkage group position of those markers linked to a common FPC contig was compared.
Combined with the published D. pulex linkage map, the linkage maps form a first-generation tool for comparative genomics of Daphnia.
For each QTL, the parental map, the linkage groups (LG), the logarithm of the odds (LOD), the 95% confidence interval (CI) in cM, the genetic effect and the percentage of phenotypic variance explained (PVE) at CV and VT, are shown.
In the published version of this map, the linkage of field position and rim sector are depicted as absolute, but we extended this approach by estimating the uncertainty regarding where each field point maps to the optic disc.
Following co-segregation analysis using JOINMAP 4.0 (Kyasma, NL) implementing the Kosambi mapping function, the linkage maps presented in Figure 2 were resolved.
In one recent paper, she applied the method on an Orbitrap Elite to map the linkages in branched poly-ubiquitin chains.
DAGGER generates a consensus map by minimizing the "error" between the consensus map and the linkage maps.
Additional file 3: Comparison of the radiation hybrid (RH) map and the linkage map.
2,081 markers, including 601 SNPs markers, were mapped onto the linkage map, and 1,532 markers were mapped in the radiation hybrid map.
