Sentence examples for map reads from from inspiring English sources

It can also map reads from RRBS library by building special indexes with improved efficiency and accuracy.

Our results show that BS-Seeker2 is able to accurately and efficiently map reads from both WGBS and RRBS protocols.

Additionally, the attempt to map reads from G. glyphis barcodes on the P. pristis reference mitogenome demonstrated that cross contamination of sequence data was not significant.

We used the CLC Genomics Workbench to map reads from each of the 454 light organ and non-light organ samples back onto the CLC Genomics Workbench/454 assembly dataset.

To this end, we downloaded all genomic sequences for every LTR studied using UCSC table browser, and used Bowtie2 (Langmead et al. 2009) to map reads from the transcriptomes of placenta, skeletal myoblast, and lung fibroblast.

The reference assembly TrVeBC2 [ 23] includes data from the haustorium of T. versicolor grown on M. truncatula and was used as a reference to map reads from each interface transcriptome.

The uniquely mapped reads from these accessions covered > 95% of the reference genome, providing an average coverage of 54.6× across the genome (Table 1).

When mapping reads from the libraries to known pre-miRNA hairpins, many reads extend beyond the known mature miRNA into the loop region of the hairpin (Figure S7), thereby confirming that these libraries contain hairpin products of the Microprocessor cleavage.

To further test readDepth, we analyzed over 47 million uniquely mapping reads from the MCF-7 breast cancer cell line generated as 55 bp mate-pairs with the Illumina GAII sequencer.

Target region mapping can force-map reads from other genomic loci into the target, leading to false positive SNPs and requiring a postprocessing cleanup.

Mapped reads from all libraries were merged before SNV calling.